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Annals of Botany

Oxford University Press (OUP)

Preprints posted in the last 90 days, ranked by how well they match Annals of Botany's content profile, based on 43 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

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Insights into the functional and genetic basis of heteranthery in Arthrostemma ciliatum Pav. ex D.Don (Melastomataceae)

Kotagal, S.; Schlick, A.; Siadjeu, C.; Hu, E. Y.; Kadereit, G.

2026-02-04 evolutionary biology 10.64898/2026.02.02.703258 medRxiv
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BackgroundMelastomes are well known for their striking diversity in stamen morphologies mostly adapted to buzz pollination by bees. The variously modified connective appendages and heteranthery in the family have fascinated botanists for more than two centuries and a variety of functions associated with pollination have been discovered for these staminal traits over the years. The repeated evolutionary shifts in these traits have been linked to pollinator shifts, likely contributing to diversification in the family. The evolutionary lability of staminal traits, especially the connective morphology, led us to hypothesize that these traits might be controlled by relatively simple genetic mechanisms and we here take the first steps to test this hypothesis by using a comparative transcriptomics approach with Arthrostemma ciliatum as our model. We also tested the functional significance of heteranthery and whether the classical division of labour hypothesis holds true for this species by comparing the number, size and viability of pollen in the two stamen types. ResultsStaminal development of this species was studied and suitable stages for transcriptome comparisons were identified. Differential expression analyses between the morphologically distinct stamen whorls at four developmental stages showed the differential expression of several transcripts involved in stamen development/elongation. Pollen comparisons between the two whorls showed that the antepetalous/inner whorl stamens have a significantly higher number of pollen and higher germination rates while the antesepalous/outer whorl stamens have significantly larger pollen. ConclusionsWe identified Jasmonate and Gibberellin signalling pathway genes (JAZ, GID1, DELLA and ARF homologs), EPF/EPFL family genes, autophagy related genes (VPE homologs) and S Locus ELF homologs as putative candidates involved in causing staminal dimorphism in A. ciliatum. Our results indicate that, for the heterantherous morph of this species, the shorter stamens (antepetalous/inner whorl) have both pollinating and feeding functions contradicting the division of labour theory. We also report the possible existence of heterostyly in A. ciliatum as an outbreeding mechanism.

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Herbarium-based measurements are reliable predictors of fresh plant traits in Neotropical Myrtaceae

Kilsztajn, Y.; Conceicao, L. H. S. d. M.; Proenca, C. E. B.; Vasconcelos, T. N. d. C.; Staggemeier, V. G.

2026-03-30 plant biology 10.64898/2026.03.26.714626 medRxiv
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PremiseHerbarium specimens are increasingly used to extract morphological traits for ecological and evolutionary studies, yet the effects of tissue desiccation on trait measurements remain poorly understood. Here, we tested whether higher tissue water content leads to greater measurement changes after herborization (H1) and whether fresh trait values can be reliably predicted from herbarium measurements (H2). MethodsWe evaluated the reliability of herbarium-based measurements by comparing fresh and dried traits of leaves, flowers, fleshy fruits, and seeds across 262 individuals representing 133 Neotropical Myrtaceae species. Phylogenetic least square models and machine-learning regressions were used to test H1 and H2. ResultsLeaves and flowers generally shrank after herborization, fruits size metrics tended to increase, and seeds were largely unaffected. Water content was significantly associated with the magnitude of herborization effects in flowers and some leaf and seed traits. Fresh trait values were accurately predicted from herbarium measurements. Prediction errors were lowest for leaf traits, followed by fruits, flowers, and seeds. DiscussionThese results partially support H1 and support H2, indicating that herbarium specimens can be reliably used for trait analyses when organ-specific responses are considered, providing a practical framework to account for potential desiccation bias in functional trait research.

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Phylogenomics of the mega genus Bulbophyllum (Orchidaceae) and implications for its infrageneric classification

Nanjala, C.; Simpson, L.; Hu, A.-Q.; Patel, V.; Nicholls, J. A.; Bent, S. J.; Gale, S. W.; Fischer, G. A.; Goedderz, S.; Schuiteman, A.; Crayn, D.; Clements, M. A.; Nargar, K.

2026-04-01 evolutionary biology 10.64898/2026.03.30.715161 medRxiv
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Understanding evolutionary relationships in hyperdiverse plant groups remains a major challenge in systematics. The orchid genus Bulbophyllum, the second largest genus of flowering plants, represents an exceptional example of phylogenetic and morphological complexity. Relationships, particularly within the species-rich Asian clade, have remained poorly resolved due to extensive morphological variation and limited resolution in previous phylogenetic studies. Here, we reconstructed phylogenetic relationships using 63 plastid genes from 355 specimens representing 322 species and 65 of the 97 recognised sections of Bulbophyllum. Our analyses confirmed that the genus comprises five major evolutionary lineages comprised of species predominantly from Australasia, Madagascar, Continental Africa, Neotropics, and Asia. We provide the first robust phylogenetic evidence for a dichotomous split within the Asian clade into two well-supported lineages: the Asian-Malesian clade and the Malesian-Papuasian clade, with the latter containing a strongly supported Papuasian subclade. Additionally, this study supports the monophyly of several currently recognised sections while clarifying relationships in previously problematic groups. This study provides the most comprehensive plastid-based phylogenomic framework for Bulbophyllum to date and establishes a foundation for future taxonomic revision and integrative analyses of diversification and trait evolution within this hyperdiverse genus.

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Common, species-specific, and accession-specific responses of foliar phytohormones and morphological traits to drought and herbivory

Xiao, X.; Aragam, K. S.; Braeutigam, A.; Dussarrat, T.; Gaar, S.; Hanusch, M.; Heinen, R.; Hildebrandt, M.; Jakobs, R.; Junker, R. R.; Keshan, R.; Mendoza Servin, J. V.; Setordjie, E.; Seymen, Y.; Steppuhn, A.; Unsicker, S. B.; van Dam, N. M.; Weber, B.; Weirauch, S. K.; Weisser, W.; Ziaja, D.; Schnitzler, J.-P.; Winkler, J. B.; Mueller, C.

2026-04-01 ecology 10.64898/2026.03.30.715323 medRxiv
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BackgroundPlants are exposed to various environmental challenges. With ongoing climate change, droughts and insect outbreaks are expected to become more frequent. Thus, a better understanding is needed of how different plant species respond to such single and combined challenges. This study investigated common versus species-specific responses to environmental challenges in three perennial plant species of different growth forms and whether responses differ intraspecifically among accessions. Clones of different accessions of the herbaceous species Tanacetum vulgare, the woody vine Solanum dulcamara, and the tree Populus nigra were subjected to similar control, herbivory, drought, and combined (drought and herbivory) treatments for the same periods. After the exposure, concentrations of foliar phytohormones and various morphological traits were measured. ResultsAcross all species, several foliar phytohormones and one of ten morphological traits responded consistently to the environmental challenges. Jasmonoyl-isoleucine was induced by herbivory and the combined treatment, abscisic acid (ABA) by drought and the combined treatment, and indole acetic acid by the combined treatment in all species. Root mass remained unchanged in all species. However, structural equation models (SEMs) revealed a shared regulatory pathway across species in which ABA connected treatment and root mass, indicating a common hormonal response potentially linking challenges to growth responses. Despite these common patterns, species-specific responses were pronounced. In P. nigra, a unique induction of salicylic acid was found under the combined treatment, while aboveground mass and root-shoot ratio remained unaffected by any treatment, in contrast to the other two species. Species-specific SEMs further indicated distinct phytohormone-mediated pathways underlying morphological variation. Phenotypic plasticity reflected these species-specific patterns, with none of the phytohormones or morphological traits exhibiting uniform plasticity across species. Intraspecific variation further shaped responses, as phytohormone and morphological trait plasticity depended on accession, indicating substantial accession-specific plant responses. ConclusionsOur results indicate that some responses to comparable challenges may be conserved across species, while others are species-specific. The combined treatment elicited the most pronounced responses, and such complex responses may become more frequent under current global change. Our study highlights that comprehensive understanding of plant responses requires systematic comparisons at both interspecific and intraspecific scales.

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Chromosome-level reference genome of the beach false foxglove, Agalinis fasciculata (Orobanchaceae)

Pezzi, P. H.; Latvis, M.

2026-02-06 genomics 10.64898/2026.02.04.703813 medRxiv
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Orobanchaceae is the largest family of parasitic plants, encompassing a full spectrum of parasitic strategies, ranging from autotrophic to holoparasitic. Agalinis is a genus of facultative hemiparasites comprising about 70 species distributed throughout the Americas, including several endemic and rare taxa. Agalinis fasciculata, the beach false foxglove, is a widely distributed species across southeastern North America. Here, we use PacBio HiFi, Omni-C, and RNA-seq data to generate the first high-quality reference genome for the genus. The nuclear genome is 2.29 Gb in size, with most sequences anchored to 14 pseudochromosomes and an N50 of 162 Mb. BUSCO analyses indicate high completeness (98.4%). Structural genome annotation identified 34,133 protein-coding genes and 39,266 transcripts, most of which have at least one functional annotation. The plastid and mitochondrial genomes were also assembled. We further examined genetic diversity and demographic history in A. fasciculata, revealing low genome-wide heterozygosity and evidence of inbreeding. This reference genome is an important resource for understanding the evolutionary history of the genus and the evolutionary patterns of parasitism within Orobanchaceae. SignificanceThis high-quality genome is the first chromosome-level assembly for Agalinis, a hemiparasitic genus in the plant family Orobanchaceae. It improves the taxon sampling within Orobanchaceae, representing an important resource for investigating patterns of genome evolution in parasitic lineages. Furthermore, Agalinis has served as a focal genus for studies of the anatomy of haustorial development, and genome annotation incorporated RNA from multiple tissues, enabling the identification of genes expressed in different tissues, including roots and haustoria. This genome also serves as a reference for evolutionary studies of other Agalinis species, many of which are endemic and of conservation concern in North and South America. Overall, the beach false foxglove genome will support studies of the evolutionary history of Agalinis and genome evolution across Orobanchaceae.

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Two chromosome-level genome assemblies of Sarracenia reveal repeat-driven expansion and gene loss associated with carnivory.

Baldwin, E. A.; Rogers, W. L.; Leebens-Mack, J.

2026-03-03 plant biology 10.64898/2026.03.01.708852 medRxiv
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Premise of the StudyCarnivory has evolved repeatedly across the plant tree of life despite being a dramatic shift from typical plant nutrient acquisition strategies. It remains largely unclear whether the evolution of carnivory takes a similar genomic trajectory. Here, we explore the genomic consequences of carnivory in the pitcher plant genus Sarracenia. MethodsWe use a combination of Pacbio HiFi long-read sequencing and trio-binning to assemble chromosome-scale genome sequences for S. psittacina and S. rosea. We conduct comparative analyses with other asterid genomes to evaluate patterns of gene family expansion and contraction during the transition to carnivory. ResultsBoth Sarracenia genomes are large ([~]3.5 Gbp) and highly repetitive ([~]87% repeats) yet only contain [~]22,000 genes. This reduced gene content reflects widespread gene family contraction. In total, 3,654 gene families have contracted, including the complete loss of 934 gene families, while only 751 gene families have expanded. The gene losses are enriched for functions related to photosynthesis, including nuclear-encoded subunits of the NADH dehydrogenase (Ndh) complex, as well as immune-related genes. ConclusionsThese results indicate that the evolution of carnivory in Sarracenia is associated with widespread gene loss rather than extensive gene family expansion. The loss of genes involved in photosynthesis and immune response suggest the relaxation of selection on these functions, which may be partially supplanted by prey-derived nutrient acquisition and pitcher-associated microbiome. These chromosome-level assemblies will enable future comparative studies in plant evolution, while also serving as critical resources for the conservation of this ecologically significant lineage.

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To self or to clone? Southern European woodland strawberry genotypes self-fertilize, whereas eastern European genotypes clone in a pollinator-free common garden.

Diller, C.; De-la-Cruz, I. M.; Egan, P. A.; Hytönen, T.; Stenberg, J. A.

2026-04-01 evolutionary biology 10.64898/2026.03.30.715235 medRxiv
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Premise of studyUnder increasingly frequent pollinator-limited environments, plants need to rely on modes of reproductive assurance such as selfing and cloning. However, few studies investigate the interplay between selfing and cloning in plants that can do both. Here, we explore mechanisms determining the relative expression of selfing and cloning throughout the European distribution of the wild woodland strawberry (Fragaria vesca) under a pollinator-free environment. MethodsWe established an outdoor common garden with 121 woodland strawberry genotypes from across Europe and excluded them from pollinators. For each genotype, we recorded reproductive traits and performed hand-pollination treatments. Key ResultsWe found a weak trade-off between cloning and selfing, driven by increased seed and fruit provisioning rather than flower production. The capacity to autonomously self-fertilize was determined by the lateral proximity of the anthers to the pistils (lateral herkogamy), but not by early inbreeding depression. Genotypes sampled at lower latitudes and altitudes were better at self-fertilizing and had smaller petals. The propensity to clone increased towards the east, where genotypes also had smaller petals, particularly at higher latitudes. ConclusionAt the species level, we detected a trade-off between the propensity for clonal reproduction and the capacity for self-fertilization. At a continental scale, the capacity to self-fertilize varied along a north-south gradient, whereas clonal propensity varied along an east-west gradient. Our results suggest that these two modes of reproductive assurance may compensate for reduced pollinator attractiveness (smaller petals) in regions where each mode is most strongly expressed.

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Differential kin interactions between invasive and native plants: evidence from Alternanthera philoxeroides and its native congener

Li, Y.; Tang, Z.; Xu, X.; van Kleunen, M.

2026-03-04 ecology 10.64898/2026.03.03.709234 medRxiv
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Reduced competition or facilitation between kin relative to nonkin can improve plant performance, particularly under resource-limited conditions. Understanding whether kin interactions differ between invasive and native species may provide insights into the mechanisms underlying the persistence and spread of invasive species, particularly for species that spread clonally. To explore this, we conducted a greenhouse experiment using the invasive Alternanthera philoxeroides and its native congener A. sessilis in China. For both species, we grew central plants without or with neighbors, and for the latter we had three intraspecific neighbor kinship treatments (kin only, nonkin only, and both kin and nonkin [mixed] neighbors). To test whether kinship effects are affected by resource limitation, we grew the plants under two watering conditions (well-watered and drought-stressed). Our findings revealed that at both the group (i.e., pot-level) and individual levels, invasive plants had a higher biomass production and experienced a less negative relative neighbor effect in kin groups than in nonkin groups, while these patterns were reversed in the native species. Although aboveground architecture of central plants did not differ significantly between kin and nonkin neighbors in either species, neighbor plants of the invasive species produced fewer nodes in kin groups than in nonkin groups, while the reverse was true for the native species. These patterns were not affected by the watering treatment. Together, these results indicate that while the native plants has stronger kin competition, the invasive species has reduced kin competition. Such reduced competition among kin in the invasive Alternanthera philoxeroides may enhance its population dominance and facilitate its spread.

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Flow cytometry protocols, relative genome size and ploidy levels for 1104 species of non-apomictic angiosperms from the Eastern Alps - a community resource based on the screening of 45,000 samples

Koutecky, P.; Zeni, T.; Magauer, M.; Manukjanova, A.; Span, G.; Sipkova, H.; Vitova, J.; Urfus, T.; Kolar, F.; Schonswetter, P.

2026-01-23 plant biology 10.64898/2026.01.21.700804 medRxiv
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Flow cytometry provides a reliable and fast method for estimating genome size and ploidy levels in plants. Until recently, most studies employed fresh tissues, which limits the use of the method with samples from remote areas or when an extremely high number of samples needs to be processed in a short time. Although there is growing evidence that silica-dried material can be used for ploidy estimation in some taxa, no flora-wide study has been available so far. Here, we provide methodological aspects of an unprecedented study exploring ploidy variation of non-apomictic angiosperms in the Eastern Alps. We have analysed ca. 45,000 silica-dried samples of 1135 species using flow cytometry with DAPI as stain. We were able to obtain ploidy level information from 1104 (97%) of species. The unsuccessful species included succulent plants of the family Crassulaceae (genera Jovibarba, Rhodiola, Sedum, Sempervivum), the achlorophyllous parasitic or mycoheterotrophic genera Orobanche and Hypopitis, and a handful of others. About 80% of samples were successfully analysed using a single universal protocol and leaf tissue, while in the remaining species the use of alternative tissues (such as petioles or flowers) and/or protocol modifications were needed (targeting composition of buffers, duration of fixation or staining time or use of alternative buffers). A total of 377 species (34%) included polyploid cytotypes and 179 (16%) species were ploidy-variable. As a community resource, we provide relative genome sizes and ploidy assignments of 1332 cytotypes retrieved from 1104 species along with methodological details (e.g. buffers, standards, analysed plant organs, histogram quality). We believe that this dataset will facilitate future research in particular species as well as in flora-wide investigations of ploidy level variation of the Central European flora in general. We are confident that novel cytotypes of many species will be discovered in other geographic areas, and we would be delighted if the present dataset could serve the botanical community for comparison.

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Trait - climate relations in Themeda triandra: a widely distributed C4 grass and crop wild relative

Jacob, V.; Atwell, B.; Yates, L. A.; Gallagher, R.; Sumner, E. E.; Britton, T.; Wright, I. J.

2026-03-06 ecology 10.64898/2026.03.04.709158 medRxiv
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O_LIQuantifying relationships between traits and climate using plants collected from diverse climatic origins, grown under common conditions, potentially provides valuable insights into climate adaptation. C_LIO_LIWe report on fifteen accessions of kangaroo grass (Themeda triandra), a C4 species distributed across Australia, Asia, the Middle East and Africa from the Andropogoneae clade of grasses that is vital to global agriculture. Plants were grown to maturity in glasshouses under two thermal regimes, with ample water supplied. Numerous physiological, "economic" and developmental traits were characterised. C_LIO_LIAs expected, plants grown at 20{degrees}C maxima had lower photosynthetic rates (Asat) and dark respiration rates, reduced leaf expansion, and delayed flowering compared with plants grown at 30{degrees}C. However, surprisingly few traits varied with climate-of-origin: accessions from colder climates had higher Asat alongside lower leaf mass per area, but only when grown at 20{degrees}C; flowering time showed the strongest correlation with site climate, with plants from wetter, warmer or less variable climates taking longer to flower. C_LIO_LIOur findings highlight remarkable phenotypic flexibility in key traits of T. triandra; this flexibility is likely key to its wide distribution. The strong relationship between flowering time and climate-of-origin underscores the importance of reproductive phenology as an adaptive trait. C_LI

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Variance in Calvin-Benson cycle intermediate levels between closely-related species in the tomato clade

Clapero, V.; Arrivault, S.; Stitt, M.

2026-03-03 plant biology 10.64898/2026.02.28.708697 medRxiv
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Published studies have reported species-variance between profiles of Calvin-Benson cycle (CBC) intermediates, not only between C4 species and C3 species, but also within C3 species (Arrivault et al., 2019, Borghi et al. 2019). It was proposed that this variance reflects lineage-dependent changes in the balance between different reactions, or poising, of the CBC. These earlier studies investigated phylogenetically-unrelated C3 species. In the current study, CBC intermediates were profiled in five closely-related species from Solanum sect. lycopersicon subsect. Lycopersicum. The levels of individual CBC intermediates showed many significant differences. In a principal component analysis, whilst three species (Solanum lycopersicum, Solanum cheesmaniae, Solanum neorickii) overlapped, Solanum pimpinellifolium and especially Solanum pennellii grouped separately, and were at opposing ends of the distribution. When combined with published data, whilst the separation between Solanum species was retained, they formed a group that was separated from five other C3 species, as well as two C4 species. It is discussed that the observed variation in CBC metabolites profiles within Solanum, together with their separation from other C3 species, supports the idea that CBC evolution is shaped both by phylogenetic relatedness and lineage-specific adaptation. HighlightVariance of intermediate levels points to poising of the Calvin-Benson cycle varying between closely-related species in the tomato clade Solanum sect. lycopersicon subsect. Lycopersicum

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Investigating the landscape of plant-pollinator interactions in a hybrid zone

Engle-Wrye, N. J.; Carril, O. M.; Mohottige, C. G.; Mlsna, T. E.; Folk, R. A.

2026-02-27 plant biology 10.64898/2026.02.25.708067 medRxiv
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Little is known about environmental drivers of opportunities for hybridization, but its phylogenetic distribution across species and areas is heterogeneous, suggesting that ecological traits may play an important role in concert with postzygotic isolation. Because plant-pollinator interactions are responsible for gene flow in most plant species, differences in the mosaic landscape of plant-pollinator interactions could explain why some plants are particularly prone to hybridization. Prezygotic isolation is mediated by sometimes complex pollen presentation; conversely, conserved pollination strategies would lead to evolutionary constraints on pollinator assemblage divergence in the speciation process and therefore predict higher opportunities for gene flow, although this hypothesis has yet to be tested. The plant taxonomic tribe Heuchereae (Saxifragaceae) is a well-characterized system for pollinator interactions and particularly for floral scent, the primary pollinator attractant in the group. Floral volatile organic compounds (VOCs) in this clade are hypervariable at the population level and are thought to be responsible for pollination selectivity, leading to divergent pollinator assemblages. Observing a contrast of hybridizing and non-hybridizing species, the levels of attractant divergence may therefore predict levels of hybridization. We investigated pollination biology in the plant genus Heuchera, notable for frequent interspecific gene flow compared to tribal relatives, asking whether high rates of hybridization may be associated with low interspecific divergence of VOCs and the pollinator assemblages they shape, using as our system the hybrid zone between H. americana var. americana and H. richardsonii in the midwestern USA. We optimized a closed-space collection and GC-MS (gas chromatography-mass spectrometry) protocol to characterize VOCs in Heuchera flowers. To identify floral visitation and effective pollinators we conducted pollination observations at 40 Heuchera populations over the span of two field seasons. GC-MS data from 89 Heuchera specimens representing 69 populations suggests that classes of VOCs, and to a large extent individual compounds, are shared within the hybrid complex while other Heuchera that are not thought to hybridize with these species have distinct species-specific compounds. Pollination observations and metabarcoding of pollinator pollen loads confirm shared effective pollinators in the hybrid zone and between adjacent parental populations. Attractant and visitation data considered together suggest that conservatism of pollinator interactions may be a typical feature associated with frequent hybridizers, perhaps arising from developmental or biochemical constraints on prezygotic isolation, and more broadly that the macroevolution of isolation mechanisms may be predictive of natural hybridization rate.

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Herbarium specimens reliably track plant phenological responses to climate change in understudied montane biomes

Peng, S.; Inouye, B. D.; Ramirez-Parada, T.; Mazer, S. J.; Record, S.; Ellison, A. M.; Davis, C. C.

2026-03-13 ecology 10.64898/2026.03.12.709842 medRxiv
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Long-term field observations typically are the "gold-standard" for inferences of phenological sensitivities in montane systems but are spatially limited. Herbarium specimens provide broader spatial coverage, but their utility to accurately capture montane phenology remains poorly known. We compared flowering phenology of 45 species inferred from herbarium specimens with comparable data from nearly 50 years of direct observations at the Rocky Mountain Biological Laboratory. Estimates of flowering time and phenological sensitivity to snow density were consistent between herbarium specimens and observations, but observations revealed secondary flowering peaks. Herbarium specimens additionally yielded shallower estimates of phenological sensitivity to spring temperature than did field observations. Across co-occurring species, "early" flowering individuals inferred from herbarium specimens, rather than the mean response across all individuals, may better approximate community-level phenological responses to temperature changes. We conclude that herbarium specimens are reliable resources for closing gaps in understanding phenological variation along elevational gradients of montane systems.

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Beyond the Highlands: Climate Drives Evolutionary Connections Between Ancient Neotropical Mountains and Lowland Biomes

Barros-Souza, Y.; Maianne, M.; Barduzzi, R. F.; Borges, L. M.

2026-02-11 plant biology 10.64898/2026.02.10.705068 medRxiv
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AimThe assembly of montane plant communities through time is underlain by historical and abiotic factors. However, the extent of evolutionary connectivity between ancient highland ecosystems and surrounding lowlands remains unclear. Here, we investigate the evolutionary connections between the campos rupestres, a hyperdiverse and fragmented montane vegetation complex in eastern South America, and lowland biomes surrounding it: savannas, rainforests, and seasonally dry tropical forests. LocationEastern South America. Time periodCenozoic. Major taxa studiedFlowering plants. MethodsUsing phylogenetic beta diversity analyses for 13 angiosperm clades, we assess the degree of lineage dissimilarity between campos rupestres subregions and adjacent biomes. We also apply generalized dissimilarity modeling to determine the role of climate, soil, and geographic distance in shaping spatial patterns of phylogenetic composition. ResultsOur results reveal high lineage permeability between campos rupestres and surrounding biomes, with lineage sharing largely reflecting biome adjacency. This pattern is mainly driven by shared climatic conditions, which are the strongest predictors of phylogenetic dissimilarity. Main conclusionsWe highlight the importance of lineage exchange between lowland and montane environments for the assembly of highland floras. By showing that lineage movements across biome boundaries have been common over time and spatial scales, our study challenges the idea that ancient Neotropical mountains are isolated sky-islands. Instead, we emphasize the dynamic nature of montane plant diversity and the pivotal role of climate in shaping evolutionary connections between highlands and lowlands.

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Predominant tetraploidy and lack of ploidy-associated genetic structure across invasive Lantana camara populations in India

Praveen, P.; Ramakrishnan, U.

2026-03-12 evolutionary biology 10.64898/2026.03.11.710965 medRxiv
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Polyploidization is widely recognised as a major driver of plant diversification, with many species persisting as mixed-ploidy systems where multiple cytotypes co-exist. Polyploids are disproportionately represented among invasive species, yet their role in facilitating biological invasions remains poorly understood. Lantana camara, one of the worlds most successful invasive plants, exhibits remarkable cytotype diversity, but the distribution and evolutionary relationships of these cytotypes in its native and invasive ranges have remained unclear. Here, we characterise ploidy variation and assess genetic differentiation among cytotypes in invasive L. camara populations across India. Flow cytometry of more than a thousand individuals reveals that tetraploids overwhelmingly dominate the invasive range, accounting for more than 95% of individuals, while triploids and hexaploids occur at much lower frequencies. Using genome-wide ddRAD-derived SNP markers from diploids, triploids, tetraploids, and hexaploids, we find no genetic differentiation among cytotypes. Instead, individuals of different ploidy levels cluster together across multiple genetic clusters, consistent with recurrent and potentially independent origins of polyploids. These patterns further suggest that L. camara polyploids likely arise via autopolyploid formation. Together, our results establish tetraploidy as the predominant cytotype in Indias invasive populations and reveal a lack of cytotype-specific genetic structure. These findings highlight the need to investigate the ecological advantages of tetraploids and the mechanisms that generate cytotype diversity, key steps toward understanding how polyploidy contributes to the invasive success of this globally important species.

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Phenotypic variability of hydraulic residual conductance and its temperature sensitivity in Abies alba

Herbette, S.; Andanson, s.; Gonzalez, A.; Blackmann, C. J.; cartailler, j.; martin, l.; Cochard, H.

2026-01-23 plant biology 10.64898/2026.01.22.700907 medRxiv
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Residual water losses after stomatal closure have recently been identified as key determinants of drought-induced hydraulic failure, particularly under heatwave conditions. However, little is known about the intraspecific variability of residual conductance (gres) and its thermal sensitivity. Here, we investigated the genetic and environmental sources of variation in gres and its associated thermal parameters (phase transition temperature T_, and temperature sensitivities Q10a and Q10b) in Abies alba Mill., together with vulnerability to xylem embolism (P50). Measurements were performed using the Drought-Box on seven French provenances grown in a common garden to assess genetic variability, and on trees growing across contrasting forest sites to quantify phenotypic plasticity. Seasonal dynamics and within-canopy microclimatic effects were also examined, and linked to needle biochemical traits. Residual conductance exhibited a marked seasonal decline, with high values in newly formed needles followed by a stabilization from late summer to the following spring, closely tracking the accumulation of cuticular waxes. In contrast, Klason lignin content showed little seasonal variation. Difference between provenances was weak for all investigated parameters, suggesting strong constraints on these safety-related traits. By contrast, gres showed significant environmental plasticity, with lower values at more climatically constrained sites, while thermal parameters and P50 remained relatively conserved. Our results identify gres as a developmentally dynamic and environmentally plastic trait in silver fir, potentially representing a key lever of acclimation to drought. Incorporating such variability into mechanistic models should improve predictions of tree vulnerability under future climates combining intensified droughts and heatwaves. Key message.Residual conductance in Abies alba is developmentally dynamic and environmentally plastic but genetically constrained, highlighting its key role in acclimation to drought and heatwave-driven hydraulic failure.

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Interspecific adaptations in root system architecture define host tolerance of Arabidopsis to biotic stresses by root feeding nematodes

Willig, J.-J.; van Schaik, C.; Faesen, R.; Suresh, S.; Sterken, M. G.; Teklu, M. G.; Smant, G.

2026-04-10 plant biology 10.64898/2026.04.08.717173 medRxiv
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Belowground, plants are exposed to a wide range of biotic stresses that vary in severity and nature, including tissue damage, disruption of vascular connectivity, and depletion of assimilates. How plants adapt their root systems to cope with different types of belowground biotic stresses is not well known. In this paper we compare above- and belowground plant adaptations to three nematode species with distinct tissue migration and feeding behaviours to study mechanisms underlying tolerance to different types of biotic stresses. We monitored both green canopy growth and changes in root system architecture of Arabidopsis inoculated with Pratylenchus penetrans, Heterodera schachtii, and Meloidogyne incognita. This revealed three distinct phases in aboveground plant responses: (i) initial growth inhibition associated with host invasion and tissue damage, (ii) persistent growth reduction associated with nematode sedentarism, and (iii) late growth stimulus in more advanced stages of infection. Specific adaptations in the root systems further revealed fundamentally different stress coping strategies. Tissue damage and intermittent feeding by P. penetrans in the root cortex did not induce significant changes in root system architecture. Tissue damage to the root cortex and prolonged feeding on host vascular cells by H. schachtii induced secondary root formation compensating for primary root growth inhibition. Prolonged feeding on host vascular cell by M. incognita alone did not induce secondary root formation, but was accompanied by typical local tissue swelling instead. Our data suggest that local secondary root formation and tissue swelling are two distinct compensatory mechanisms underlying tolerance to sedentarism by root-feeding nematodes. HighlightHow plants utilize root system plasticity to cope with different types of biotic stresses by root feeding nematodes remains largely unknown. Here, we report on specific adaptive growth responses in Arabidopsis roots to three nematode species, Pratylenchus penetrans, Heterodera schachtii, and Meloidogyne incognita, with fundamentally different strategies for host invasion, subsequent migration through host tissue, and feeding on host cells.

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Physiological dominance of the scion in shaping root architecture under suboptimal temperature

Cochavi, A.; Oren, E.; Baumkoler, F.; Smirnov, E.; Lati, R. N.

2026-02-12 plant biology 10.64898/2026.02.11.705274 medRxiv
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BackgroundNon-optimal temperatures have become a major constraint on plant development under rapidly changing climatic conditions. Both sub- and supra-optimal temperatures reduce physiological activity, alter plant morphology, lead to plant mortality, and ultimately decrease crop productivity. Temperature-tolerant plants employ physiological and morphological mechanisms to mitigate such stress. In this study, we aimed to identify the source of temperature tolerance in warm-climate adapted melon (Cucumis melo L.). ResultsSuboptimal temperature-tolerant accession (Ananas Yoqneam; AY) and susceptible accession (PI414723) were reciprocally grafted and grown under controlled temperature regimes of 16 {degrees}C, 25 {degrees}C, and 35 {degrees}C. Physiological and morphological traits were measured to characterize tolerance mechanisms and whole-plant responses. Temperature emerged as the dominant factor governing plant performance. Whereas non-grafted parental lines maintained consistent differences across all temperature regimes, reciprocal graft combinations diverged mainly under suboptimal (16 {degrees}C) conditions. Under these temperatures, scion identity strongly determined whole-plant performance through biochemical limitations. ConclusionThese results highlight the importance of scion-derived traits in abiotic stress tolerance and their downstream influence on root function.

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The importance of postzygotic barriers at the early stages of speciation in trees

Stacy, E. A.; Rhoades, A. M.; Brinck, K. W.; Wallace, A. H.

2026-02-24 evolutionary biology 10.64898/2026.02.23.707326 medRxiv
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Recent reviews of isolating barriers in plants conclude that prezygotic barriers play an outsized role in plant speciation; yet these conclusions derive overwhelmingly from studies of sympatric, perennial herbs in temperate zones, and at later stages of speciation. Trees possess several traits that are expected to influence barrier evolution, including prolonged generation times and reproduction, predominant outcrossing, and long-distance gene flow. We examined early-evolving post-pollination barriers between ecologically diverged, vegetatively distinct varieties of the tree species, Metrosideros polymorpha, that have a common floral morphology and highly overlapping flowering times. We performed controlled crosses between each of Hawaii Islands four varieties and maternal trees of the high-elevation variety and examined pollen-tube growth, fruit set, seed germination, and seedling phenotype. We then monitored survivorship, maturation rate, and fertility of F1 hybrids over [≥]8 years alongside parental controls and a fourth F1 genotype derived from companion studies. The four F1 crosses showed four contrasting patterns and strengths of predominantly postzygotic isolation, including high F1 mortality that manifested over several years. Results from this and other tree studies suggest that ecological speciation in trees follows the classical speciation model of early postzygotic barrier formation followed by reinforcement, whenever stable environments promote recurring hybridization.

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Resurrected in the field: benefits of rapid adaptation to historic drought seen mainly at the leading edge of a plant' species range

Pennington, L. K.; Sexton, J. P.

2026-03-12 evolutionary biology 10.64898/2026.03.12.711156 medRxiv
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Montane plant populations are experiencing novel conditions due to climate change. Furthermore, climate change is causing increased climate perturbations, such as the 2012-2016 drought in the western US, remarkable in its aridity, longevity, and warmer temperatures. This drought provided an opportunity to understand how montane populations respond to extreme perturbations, including at range limits. We resurrected seeds of the endemic annual plant Erythranthe laciniata, collected in 2008 or earlier (before the drought) and in 2014 (the height of the drought), in a common garden experiment to understand how drought influenced evolution in contemporary field conditions. The study included nine populations across the species range, including range edges. Over 2,100 replicates were sown in three common gardens at natural populations at low, central, and high elevations. We recorded phenology and flower production to estimate lifetime fitness. This experiment took place in 2021, a year with low precipitation and high temperatures. We found higher fitness in the drought generation at the high garden, while both generations showed similar fitness at the central and low gardens. We detected climate adaptation at the low and high gardens, and rapidly evolved faster phenology at the high garden. Lifetime fitness was substantially lower at lower gardens overall, even for low-elevation populations. Low-elevation populations outperformed central populations at the central garden, suggesting adaptive mismatch. Together, these results indicate rapid contemporary adaptation that is beneficial at the leading edge of the species range. Nevertheless, low fitness at lower elevations may foreshadow range contraction under continued climate change.